Across science—from astrophysics to molecular biology to economics—researchers are overwhelmed by the sheer amount of data they are collecting. But, this problem is better viewed as an opportunity since, with the right computing resources and algorithmic tools, scientists might unlock new insights from the swathes of data to carry their field forward.
AI4science (or artificial intelligence for science) is an initiative at Caltech led by Anima Anandkumar and Yisong Yue that aims to bring together AI researchers with experts from other disciplines to push modern AI tools into every area of science and engineering. Launched in the summer of 2018, the initiative organizes talks, courses, and tutorials aimed at training researchers from across the scientific spectrum in the theory and practice of machine learning algorithms. Weekly AI4science office hours also allow researchers to ask computer scientists for help—hopefully stimulating new interdisciplinary research at Caltech. Additionally, seed grants for researchers applying AI to new applications in the sciences are allocated yearly through the Carver Mead New Adventures program.
Here are a few examples of Caltech professors transferring artificial intelligence and machine learning research to other disciplines.
To find out more about this new initiative, visit the AI4science website.
AI4neuro
Joel Burdick, Richard L. and Dorothy M. Hayman Professor of Mechanical Engineering and Bioengineering, is applying machine learning algorithms (some designed by Caltech's Professor Yisong Yue) to help patients with spinal cord injuries to walk again. The so-called "neural prosthesis" is a device which plugs into a human's nerve endings, reads the electrical signals and uses them to control a mobility-assisting device.
AI4climate
Andrew Stuart, Bren Professor of Computing and Mathematical Sciences, is applying machine learning algorithms to build more fine-grained climate models. Working with Professor Tapio Schneider in Caltech's Climate Dynamics Group, Stuart hopes to build better predictive models of the Earth's changing climate.
AI4physics
Maria Spiropulu, Professor of Physics, is applying machine learning methods to try to make sense of the floods of data coming in from the Large Hadron Collider at CERN. Currently most of the roughly one petabyte of data collected every second at CERN must be thrown away, so even deciding which data to keep is an important problem in the hunt for signals in the dark.
Awards
The flagship programs of the AI4Science initiative are the selection of AI4Science Graduate and Postdoctoral Fellows and the Cloud Credit Grant program, both of which are sponsored by Amazon AWS. The recipients of this are listed below. Additionally, the AI4Science initiative sponsors awards through the Carver Mead New Adventures Fund and organizes workshops, seminars, summer schools, and other events centered around AI and its applications.
AI4Science/Amazon AWS Fellows
Zhoufan (Francesca) Li (Advisor: Frances H. Arnold/Yisong Yue)
Changhao Xu (Advisor: Wei Gao)
Maria Carilli (Advisor: Lior S. Pachter)
Christopher T. Yeh (Advisor: Yisong Yue)
Yiheng Lin (Advisor: Adam Wierman/Yisong Yue)
Nicholas H. Nelsen (Advisor: Andrew Stuart)
Zihui (Ray) Wu (Advisor: Katie Bouman)
Jing Yu (Advisor: John Doyle/Adam Wierman)
Elena-Sorina Lupu (Advisor: Soon-Jo Chung)
Ignacio Lopez-Gomez (Advisor: Tapio Schneider)
Rebecca Gallivan (Advisor: Julia R. Greer)
Andrew Charbonneau (Advisor: Chiara Daraio)
Zongyi Li (Advisor: Anima Anandkumar)
Bijan Mazaheri (Advisor: Shuki Bruck/Leonard Schulman)
Dmitry Burov (Advisor: Andrew Stuart)
Jennifer J. Sun (Advisor: Pietro Perona/Yisong Yue)
Frankcesco (Frank) Lanfranchi (Advisor: Doris Tsao (Berkeley)/Mikhail Shapiro)
Sara Beery (Advisor: Pietro Perona)
Charles Guan (Advisor: Richard A. Andersen)
Kadina Johnston (Advisor: Frances H. Arnold)
Nikola Kovachki (Advisor: Andrew Stuart)
Zhuoran Qiao (Advisor: Thomas F. Miller III)
Guannan Qu (Advisor: Steven Low/Adam Wierman)
He Sun (Advisor: Katie Bouman)
AI4Science/Amazon AWS Cloud Credit Recipients
Developing a DFT-based Ligand-Substrate Prediction Pipeline for Nickel-Catalyzed Reactions
Sarah Reisman, Chemistry and Chemical Engineering
Exploring the effects of rapidly acting antidepressants on neuronal activity through microscopy and deep learning
David A. Prober, Andrey Andreev, Zack Blumenfeld & Henry A. Lester, Biology and Biological Engineering
Growing Arbitrary Patterns with Neural Reaction-Diffusion
Eric Winfree & Salvador Buse, CS, CNS & BioEng / Engineering and Applied Science
Graph neural networks for volumetric meta-optics design
Andrei Faraon, Applied Physics and EE/Engineering and Applied Science
Physics-based Modeling of Near-Source Tsunami Hazards for Coastal Communities
Ares J. Rosakis & Mohamed Abdelmeguid, Aeronautics & MechE/Engineering and Applied Science
AstroQML: Quantum Machine Learning for Astronomy
Matthew J. Graham, Astronomy
Characterizing and leveraging the expressivity of protein dimerization networks
Michael Elowitz, Biology and Biological Engineering
Finding Rare Astrophysical Sources
Matthew Graham, Lynne Hillenbrand, Michael Coughlin, Andrew Drake & Ashish Mahabal, Astronomy
Activity-Enhanced Self-Assembly of Colloidal Diamonds
John F. Brady, Chemistry and Chemical Engineering
Tracking natural insect populations with AI
Michael H. Dickenson & Joseph Parker, Biology and Biological Engineering
Sentence-level classification of Biological Data for Semi-automated Knowledgebase Curation at WormBase
Paul W. Sternberg, Biology and Biological Engineering
NUPACK: Molecular Programming in the Cloud
Niles A. Pierce, Biology and Biological Engineering
Multiphysical Single Protein Identification - Deep Learning for Multiphysical Single Protein Identification
Michael Roukes Group, Physics, Mathematics and Astronomy
Political Polarization, Geographic Sorting, and Novel Methods for Large Administrative Data
Claudia Kann & Daniel Ebanks, Humanities and Social Sciences
Dynamic Topic Modeling with Spectral Methods
Zhuofang Li, Social Science
Optimized Terapixel Scale Processing of Astronomical Images
Graham (Bruce) Berriman, IPAC
BBE Education
Justin Bois, Biology and Biological Engineering
Using Cloud Computing For The Detection And Prevention of Social Media Misinformation and Harassment
R. Michael Alvarez, Humanities and Social Sciences
Learning an Index of Economic Complexity
Frederick Eberhardt & Patrick Burauel, Humanities and Social Sciences
Harm Reduction in Tobacco Addiction: Pharmacokinetics of Nicotine for Smoking Cessation
Henry A. Lester, Biology and Biological Engineering
NUPACK: Molecular Programming in the Cloud
Niles A. Pierce, Biology and Biological Engineering
Preventing T cell exhaustion by engineering oscillatory circuits
Shirin Shivaei, Bioengineering
The ZTF AGN Catalog
Matthew J. Graham, Astronomy
Computational design of computational protein networks
Michael Elowitz, Biology and Biological Engineering
Text Similarity Query System to Improve Biological Curation of Scientific Articles at WormBase
Paul Sternberg, Hans-Michael Muller, Valerio Arnaboldi, Daniela Raciti, Kimberly Van Auken, Biology and Biological Engineering
Active Drug Delivery
John F. Brady, (Edmond) Tingtao Zhou, Zhiwei Peng, Chemistry and Chemical Engineering
Expanding the Definition of a Functional Protein with Ancestral Sequence Reconstruction for Semi-Supervised Transfer Learning in Protein Engineering
Bruce J. Wittmann, Kadina E. Johnston, Frances H. Arnold, Chemistry and Chemical Engineering
Discovery of Microscopic Control Strategies Involving Active Matter by Using State-of-the-Art Reinforcement Learning Techniques
Dominik Schildknecht, Enrique Amaya, Matt Thomson, Biology and Biological Engineering
Causal Discovery Methods for Astrophysical Data
Frederick Eberhardt, Eric Huff, Humanities and Social Sciences
Computational Lineage Motif Analysis of cell fate decision programs during differentiation
Michael Elowitz, Biology and Biological Engineering
Memory maps as long-term memory storage in recurrent neural networks
James Gornet, Matt Thomson, Biology and Biological Engineering
Embedding of single cell drug perturbation experiments by graph neural networks
Jialong Jiang, Sisi Chen, Tahmineh Khazaei, Matt Thomson, Biology and Biological Engineering
Millisecond Astronomy with the Zwicky Transient Facility
Mansi Kasliwal, Igor Andreoni, Matthew Graham, Ashish Mahabal, Roger Smith, Stephen Kaye, Sterl Phinney, Richard Walters, Physics, Mathematics and Astronomy
Finding Rare Astrophysical Sources
Mahabal Ashishm, Kevin Burdge, Michael Coughlin, Andrew Drake, Dmitry Duev, Matthew Graham, Lynne Hillenbrand, Przemek Mroz, Joannes Van Roestel, Physics, Mathematics and Astronomy
NUPACK: Molecular Programming in the Cloud
Niles Pierce, Biology and Biological Engineering
Development of a high throughput analysis pipeline for whole-brain light sheet imaging during behavior
Andrey Andreev, Amina Kinkhabwala, David Prober, Biology and Biological Engineering